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Scalable genomics platform where customers have full control. Designed for agentic workflows
Genomic Data, Ready for Agents
Codified Genomics offers data warehousing that makes the world’s genomic data accessible to AI agents - and to the people who build, deploy and depend on them. Variants, genes, phenotypes, populations and the evidence linking them, served through interfaces that agents can use.
This does not constitute an endorsement
The problem
Genomic data is fragmented across dozens of databases, schemas and file formats. Every team, from clinical, research, biotech or AI, rebuilds the same plumbing before they can ask real questions. Agents hit the same wall, only faster and at greater cost.
What we built
The Codified Data Ecosystem (CDE) is a unified, query-ready warehouse of annotated genomic data. It harmonizes variant, gene, pathway, population, phenotype and disease information into a single datastore, exposed through API and MCP-compatible interfaces designed for agentic workflows.
Ask a question in natural language. Pull structured evidence for a variant. Run cohort-scale queries. Wire it into a diagnostic pipeline, a drug discovery loop, or a clinical decision tool. The warehouse handles the genomics so your agents can handle reasoning.
Built for everyone working with genomic data
For developers building agents
A documented API, MCP server, and structured responses agents and parse and cite. No scraping, no schema-wrangling, no hallucinated gene symbols
For biotech and pharma R&D
Target discovery, variant interpretation, and cohort analysis at the speed of a query. Your data stays in your controlled environment
For clinical laboratories and diagnostics
ACMG-aligned evidence, prioritization, and reporting; now agent accelerated.
A decade of operational experience
Over 24,000 exomes, 70,000 gene panels, and 5,000 Whole genomes analyzed on Codified infrastructure. Our software has supported hundreds of clinical interpretations, the discovery of dozens of new disease mutations and the description of entirely novel diseases. The CDE is build on that operational foundation.
About
Founded in 2013 by Matthew Bainbridge and Eric Venner (CTO) out of Baylor College of Medicine, Codified Genomics has spent more than a decade building infrastructure for clinical and research genomics.